PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g20660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 794aa    MW: 88860.6 Da    PI: 6.4251
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g20660genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23127227198
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  Tp5g20660 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVTGDSVIFI--RNERNQLL 222
                99*****************************96555555..8************************************************..45777779 PP

                EEEE- CS
         B3  94 vkvfr 98 
                ++++ 
  Tp5g20660 223 LGIRH 227
                88876 PP

2Auxin_resp1102.4e-36253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+v+Y+Pr+s+seFv ++ k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+ dld+vrWpnS+Wrs+k
   Tp5g20660 253 AAHAAATNSCFTVFYHPRSSSSEFVLPLPKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDSVRWPNSHWRSVK 336
                 79*******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-48113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-40120242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-21126219No hitNo description
PfamPF023624.3E-21127227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182127229IPR003340B3 DNA binding domain
SMARTSM010192.6E-22127229IPR003340B3 DNA binding domain
PfamPF065074.7E-32253336IPR010525Auxin response factor
PfamPF023095.2E-8683772IPR033389AUX/IAA domain
SuperFamilySSF542772.62E-7687763No hitNo description
PROSITE profilePS5174522.6688772IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MNLSTSGFGH QSHEGEKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE  60
VEGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMVLQ PLTQEEQKDT FVPIELGIPS  120
KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML  240
SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDSVRWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT  360
TFPMYPSLFP LRLKRPWHPG ASSLQDSRGD LTWLRGGAGE NGMLPLNYPS ANVFPWMQQR  420
LDLSLLGTDQ NQQYQAMLAA GLQNIGGGDP LRQQFVQLQE PNHQYLQQSA AIHSSDLLLQ  480
QHHQASSQQQ LPRHLLQPQT QMTLPQQNMR QEVSNQIAGQ PQQPDRVWQH SDLLSPSFMK  540
SDFTDLNSKF TSTASPVQQQ NMTFQGTGDS SNLLNFSITG QSVQSEQLPT QLWSLKHSHP  600
ESNDFSEPLS LRQAYGRTSP LEPPNTQNLS LFGVDSDSGL FLPTTVPRFG TADADTSSLP  660
LTDSGFQNTL YGSMQETPEL SHGAGQTKNF VKVYKSGSVG RSLDISRFSS YHELREELGK  720
MFDIKGLLED AFRSGWQLVF VDKEDDILLL GDDPWESFVN SVWYIKILSP DDVQKMGENG  780
EGSNGSFLQN LTHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1541635747388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527600.0AK352760.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-M20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391521.10.0hypothetical protein EUTSA_v10018139mg
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLE4MW630.0E4MW63_EUTHA; Auxin response factor
TrEMBLV4KG440.0V4KG44_EUTSA; Auxin response factor
STRINGBra004125.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8